Can you give a bit more information ...
In KiCad main program, click on Preferences - Configure Paths. Please post a screenshot of what that shows.
In Pcbnew, move your mouse over one of the resistor footprints (are all the resistors using the same footprint?). Then press 'E' key to bring up Footprint Properties. Click on Footprint Editor button and check that the X and Y axes pass through pin 1 of the footprint.
While in Footprint Properties, select the 3D Settings tab and post a screenshot of that, please.