You mean in cvpcb?
The footprint filter for conn_01x04 (or all conn_##x##) connector is set to show only the pin strip footprints when the symbol filter is selected in cvpcb.
Deselect this filter and select the number of pins filter. (And maybe even the by selected library filter.) To reduce the number of suggested footprints. (Screenshot from development version. The keyword filter option does not exist in the stable version of KiCad. Other details might also differ.)
For your molex connectors: Select Connectors molex in the left most column, set the filter to by libray and by pin number. Choose your footprint. (If your molex connector does not yet exist you might need to make it. But there are lots of molex connectors already in the library.)
If you do not have a Connectors_Molex library get back to us, we will give you the directions on how to add it. (I don’t want to confuse you here with to much unnecessary information.)
Just a hint: footprint library wizard in footprint editor or pcb_new.