Ok, I will answer my own question since I accidently figured out how. Hopefully I can make it understandable.
Solves three issues:
1- Print multiple layers on one sheet
2- If you have a laser printer you only have to run the transperancy through once. No warping.
3- Work around bug for pcbnew not printing properly to PDF.
You will need:
Inkscape 0.91 installed. SVG is native to it and it's freeware.
steps in text:
1-In pcbnew ensure you have the correct paper size for your pcb which you will printing on.
2-Use Plot from the pcbnew tool bar (not 'File > Export SVF') you get different options, if needed.
3-Select the output for 'SVG' and select your preferences then click on Plot.
4-Open Inkscape then 'File > Open' and load your save 'SVG' file exported from pcbnew
5-Any additional layers use file import to load them onto the same sheet.
I printed directly onto a transperancy and no loss or gain in scale. All one to one.