I am new at this so please bare. My sch went fine. Made my PCB and ran the track and unconnected test. The results showed no points unconnected, but all of the transistors showed as not having plated through holes. I had used standard library symbols. Help.
A screenshot would help to understand what you mean and with a bit of luck to tell what the solution is.
At first glance, your problem seems to be with the footprints - not the symbols. There is an FAQ article that tries to clarify the difference between symbols and footprints.