I have a footprint with a polygon and multiple pads (same number) inside the polygon. It gives several design rule errors. It looks like it does not like the pads inside the polygon. (clearance violation pth pad / polygon)
Is this somehow possible or another way to achieve this ?
Yes. You have to use the “Edit pad as graphic shape” option from the RMB-click context menu in the footprint editor.
The description for this is currently missing in the documentation, but you could search in this forum. (and get for instance: How do I create pads out of these polygons in KiCad 8?)
If you play with this feature start with an easy task: one central pad, one surrounding polygon. And increase difficulty slowly (multiple pads inside the polygon, multiple shapes, …) to get familiar with this feature.
I spent some more time with it. The “Edit pad as graphic shape” is somehow usable. It does have some limitations. It really defines a large THT pad, which means it is identical both bottom and top layer.