I have a custom PCB I designed where I’m trying to generate the Gerber files, but suddenly it’s no longer working as expected. Many of the traces I have on the front and back copper seem to be covered by the copper pour, which is a strange issue.
I think the issue is that you have a lot of layers selected in the “Plot on All Layers” list. So for each of your layers, instead of getting just F.Cu, or just B.Cu, etc., you’re getting F.CU and B.Cu and F.Paste and B.Paste and F.Silkscreen and B.Silkscreen and F.Mask and B.Mask.
For general gerber plotting for production, you probably don’t want any of those layers selected for plotting on all layers.
I was adding board outline to all gerbers for years until few years ago I was told by PCB manufacturer that they don’t need it. Now generating gerbers I use only the table on the left.