There is no standard-workflow directly implemented for this feature. So the exported gerber / 3D-viewer doesn’t directly support this feature.
I would draw the cavity-geometry on an additional user-layer (with only this z-axis-milling). Write a note onto this layer how deep the cavity should be milled and from which side. And include this additional gerber-file and the milling-notes into the files for the pcb-manufacturer.
But prior to this: try to contact the pcb-manufacturer of your choice and ask them how they want the data. It’s also possible that the pcb-manufacturer already has instructions for this use-case on his webseite/FAQ. z-axis-milling is still an exception, but no rocket science anymore.