Did per sheet schematic annotation got broken in latest releases?

Schematic
1

I’m using the latest KiCad build (see version info below) and I’ve noticed that per sheet annotation got broken in my setup.
I try to annotate a schematic sheet with the following settings:

434×641 44.1 KB

But instead of getting symbol references with appropriate sheet number as the first digit (e.g. “R301”) I aways get references with “1” as the sheet number (e.g. “R101”). It used to work OK several weeks ago.

This is a hierarchical design with a root sheet and four “branch” sheets. All sheets are different (e.g. no reusable blocks)

Could someone please check it on their latest build and report?

Application: eeschema
Version: 0.201601171446+6489~42~ubuntu15.10.1-product release build
wxWidgets: Version 3.0.2 (debug,wchar_t,compiler with C++ ABI 1009,GCC 5.2.1,wx containers,compatible with 2.8)
Platform: Linux 4.2.0-24-generic x86_64, 64 bit, Little endian, wxGTK
Boost version: 1.58.0
         USE_WX_GRAPHICS_CONTEXT=OFF
         USE_WX_OVERLAY=OFF
         KICAD_SCRIPTING=ON
         KICAD_SCRIPTING_MODULES=ON
         KICAD_SCRIPTING_WXPYTHON=ON
         USE_FP_LIB_TABLE=HARD_CODED_ON
         BUILD_GITHUB_PLUGIN=ON
2

Just checked: it works fine in the 4.0.1 release.

Application: kicad
Version: 4.0.1-stable release build
wxWidgets: Version 3.0.2 (debug,wchar_t,compiler with C++ ABI 1009,GCC 5.2.0,wx containers,compatible with 2.8)
Platform: Windows 8 (build 9200), 64-bit edition, 64 bit, Little endian, wxMSW
Boost version: 1.57.0
         USE_WX_GRAPHICS_CONTEXT=OFF
         USE_WX_OVERLAY=OFF
         KICAD_SCRIPTING=ON
         KICAD_SCRIPTING_MODULES=ON
         KICAD_SCRIPTING_WXPYTHON=ON
         USE_FP_LIB_TABLE=HARD_CODED_ON
         BUILD_GITHUB_PLUGIN=ON
3

Possibly due to the eeschema refactoring going on?