I understand that you used at schematic and PCB 3 connectors having 8 pins each and you ask how to replace them wit 8 connectors having 3 pins each.
It is how I understand this:
The answer is: start from using 3 pin connector symbols. Use 8 of them at schematic, make there wire connections and there should be no problem to map it at PCB.
If you ask how to clearly make these connections at schematic my recent post can be helpful: